Machine learning, bio-modeling and medical image processing in prediction of metastases in lung cancer	Project manager: Andrzej Świerniak
Type: Grant NCN: Opus (UMO-2020/37/B/ST6/01959)	Duration: 2021-2024 (27 month/s left)

Mathematical modelling of neutralization processes of reactive oxygen species in different types of cells	Project manager: Sylwia Ciesielska
Type: Grant NCN: Preludium (2019/35/N/ST6/04281)	Duration: 2020-2022 (9 month/s left)

Systems approach to cancer progression and prognosis: New models and statistics for analysis of genomic data	Project manager: Marek Kimmel
Type: Grant NCN: Opus (UMO-2018/29/B/ST7/02550)	Duration: 2019-2022 (5 month/s left)

Development of methods for bias correction of gene expression measurements	Project manager: Roman Jaksik
Type: Grant NCN: Sonata (2016/23/D/ST7/03665)	Duration: 2017-2021 (0 month/s left)

Efficient simulation algorithms for models of stochastic processes in computational biology and synthesis of the signaling pathways models.	Project manager: Krzysztof Puszyński
Type: Grant NCN: Opus (UMO-2016/23/B/ST6/03455)	Duration: 2017-2021 (completed)

Mathematical Tools for Analysis of Genomic Diversity of SARS-CoV-2 Virus in the Context of Its Co-Evolution with Host Populations	Project manager: Marek Kimmel
Type: Other (DMS-2030577)	Duration: 2020-2021 (completed)

Molecular diagnostics and imaging in individualized therapy for breast, thyroid and prostate cancer	Project manager: Krzysztof Fujarewicz
Type: Grant NCBIR (Strategmed2/267398/4/NCBR/2015)	Duration: 2015-2020 (completed)

Redox regulation mechanisms in different types of cells	Project manager: Sylwia Ciesielska
Type: Badania statutowe, młodzi (BKM) (BKM-698/RAU1/2020)	Duration: 2020-2020 (completed)

-	Project manager: Patryk Bil
Type: Badania statutowe, młodzi (BKM)	Duration: 2020-2020 (completed)

Applications of three-dimensional vascular network models.	Project manager: Krzysztof Psiuk-Maksymowicz
Type: Grant NCBIR (TANGO3/420990/NCBR/2019)	Duration: 2019-2020 (completed)

System engineering approach to modeling, analysis and prediction of outcome of combined anticancer therapies	Project manager: Andrzej Świerniak
Type: Grant NCN: Opus (DEC-2016/21/B/ST7/02241)	Duration: 2017-2020 (completed)

Modeling and experimental studies to understand the effects of irradiation on RNA interference	Project manager: Marek Kimmel
Type: Grant NCN: Opus (UMO-2015/19/B/ST7/02984)	Duration: 2016-2020 (completed)

The influence of cellular stress on miRNA biogenesis	Project manager: Izabella Ślęzak-Prochazka
Type: Grant NCN: Sonata (2015/19/D/NZ1/03443)	Duration: 2016-2019 (completed)

Modeling and Simulation of Drug - Target Residence Time	Project manager: Marcin Pacholczyk
Type: Other	Duration: 2017-2018 (completed)

Systems biology of responses of human cells to stress. Generation of heterogeneity, paracrine regulation and evolutionary analysis.	Project manager: Marek Kimmel
Type: Grant NCN: Maestro (DEC-2012/04/A/ST7/00353)	Duration: 2012-2017 (completed)

Sensitivity methods in analysis of biological systems	Project manager: Jaroslaw Smieja
Type: Grant NCN (DEC-2013/11/B/ST7/01713)	Duration: 2014-2017 (completed)

Platform for remote testing and analyzing of biomedical data	Project manager: Andrzej Świerniak
Type: Grant NCBIR (PBS3/B3/32/2015)	Duration: 2015-2017 (completed)

Control of the intracellular processes	Project manager: Krzysztof Puszyński
Type: Grant NCN: Sonata (DEC-2012/05/D/ST7/02072)	Duration: 2013-2016 (completed)

Mathematical and computational models of cell cycle regulation and spatial paracrine regulation in biological cells, importance of stochastic effects	Project manager: Krzysztof Fujarewicz
Type: Grant NCN: Opus (DEC-2012/05/B/ST6/03472)	Duration: 2013-2016 (completed)

Bioinformatics and biophysical models of NF-kappaB binding sites in DNA: genomewide prediction of binding sites, experimental confirmation and co-evolution with the NF-kappaB family	Project manager: Marek Kimmel
Type: Grant NCN: Opus (DEC-2012/05/B/NZ2/01618)	Duration: 2013-2016 (completed)

Integrated informatics system for the support of cancer research of environmental origin	Project manager: Jarosław Smieja
Type: Grant NCBIR (POIG.02.03.01-00-040/13)	Duration: 2014-2015 (completed)

Parallel algorithms for creation and simulation three-dimensional vascular network	Project manager: Krzysztof Psiuk-Maksymowicz
Type: Grant NCN: Opus (UMO-2011/03/B/ST6/04384)	Duration: 2012-2015 (completed)

Advanced tools for the prediction and evaluation of the glycosylation pattern in cells	Project manager: Artur Bal
Type: Grant NCN (N N518 283640)	Duration: 2011-2014 (completed)

Computational methods for modeling and control of processes as a tool for planning cancer therapy protocols.	Project manager: Andrzej Swierniak
Type: Grant NCN (N N519 647840)	Duration: 2011-2014 (completed)

Biological and simulation analysis of the ATM signaling pathway as an activator of the p53 and NF-kB modules.	Project manager: Krzysztof Puszynski
Type: Grant NCN (N N518 287540)	Duration: 2011-2014 (completed)

Analysis of gene regulation processes in cells exposed to ionizing radiation	Project manager: Roman Jaksik
Type: Grant NCN: Preludium (DEC-2011/01/N/NZ2/05358)	Duration: 2011-2013 (completed)

Analysis of protein mass profiles obtained by MALDI-ToF spectrometry to discover signatures of cancer	Project manager: Michał Marczyk
Type: Grant NCN: Preludium (DEC-2011/01/N/NZ2/04)	Duration: 2011-2013 (completed)

Mechanisms of cellular responses to ionizing and ultraviolet radiation	Project manager: Joanna Rzeszowska-Wolny
Type: Grant NCN (N N518 497639)	Duration: 2010-2013 (completed)

Interaction of cellular regulatory pathways: modeling of random- and spatial-effects, oscillations and adaptation, and identification of models based on experimental data	Project manager: Marek Kimmel
Type: Grant NCN (N N514 411936)	Duration: 2009-2012 (completed)